β-carboline is a natural alkaloid found in animals, plants, and microorganisms, exhibiting a wide range of biological and pharmacological activities such as antibacterial, anticancer, antiviral, antimalarial, anticonvulsant, anti-thrombotic, and central nervous system inhibitory activities. Imidazo[1,2-a]pyridine compounds serve as an important intermediates in organic chemistry, widely distributed in natural products and organometallics, possessing biological activities including anticancer, antiparasitic, antimicrobial, antifungal, anti-inflammatory, and sedative properties, and are currently utilized in various marketed drugs.
Based on the principle of pharmacophore grafting, this study modifies the β-carboline skeleton by introducing a fused imidazole structure at the 1,2-positions of the β-carboline ring, synthesizing a series of novel β-carboline derivatives. Among them, compounds with high anticancer activity are screened, aiming to make breakthroughs in cancer drug development.
In the first part, starting from L-tryptophan and formaldehyde, a series of reactions including Pictet-Spengler reaction, oxidation, amino substitution, and N9-alkylation were carried out to generate the intermediate compound 9-substituted-1-amino-β-carboline. Subsequently, this intermediate compound was reacted with various bromoketones to synthesize a total of 40 2,11-disubstituted β-carboline fused imidazole derivatives.
In the second part, utilizing the previously synthesized crucial intermediate compound, 9-substituted-1-amino-β-carboline, as a starting material, it undergoes reactions with various aldehydes, leading to the synthesis of 29 3,11-disubstituted β-carboline fused imidazole derivatives.
The two parts combined synthesized a total of 69 compounds. The structures of these compounds were characterized via 1H NMR, 13C NMR, HRMS, and X-ray single crystal diffraction. Furthermore, the anti-tumor activities of these compounds were evaluated in vitro using the MTT assay against five types of tumor cells: lung cancer (A549), gastric cancer (BGC-823), murine colon cancer (CT-26), liver cancer (Bel-7402), and breast cancer (MCF-7). The results indicate that most compounds exhibit certain activities against tumor cells, with some compounds showing inhibitory activity against one or more types of tumor cells surpassing that of the positive control, cisplatin.
Preliminary structure-activity relationship (SAR) analysis indicates that in the compounds synthesized in the first part, introducing 4-fluorophenyl, 4-trifluoromethylphenyl, or 4-methoxyphenyl at the C2 position of the target compound skeleton, or introducing benzyl or 4-fluorobenzyl at the C11 position, can enhance the anti-tumor activity of the compounds. When the C2 position is substituted with an aryl group, the activity is higher compared to alkyl substitution. In the compounds synthesized in the second part, introducing 4-fluorophenyl or 4-methoxyphenyl at the C3 position of the compound skeleton, or introducing benzyl or 4-fluorobenzyl at the C11 position, leads to an increase in the anti-tumor activity of the compounds. The relationship between the anti-tumor activity of the compounds and the substituents at the C11 position is as follows: 4-fluorobenzyl > benzy l> phenethyl > methyl > hydrogen. Additionally, molecular docking simulations of synthesized compounds were performed using OpenEye software, followed by visual analysis with PyMOL and Discovery Studio (DS) software. The results indicate that the target compounds can form relatively stable binding with the target protein, engaging in various interactions such as hydrogen bonding with the protein.
Furthermore, the activities of the target compounds from both parts were compared. By comparing compounds with identical 11-position substituents and identical 2- and 3-position substituents, it was observed that compounds with 3-position substituents exhibited overall higher activity than those with 2-position substituents. Specifically, compound T9db demonstrated potent inhibitory activity against five types of tumor cells (IC50 values all below 10 μM), indicating its potential as a lead anti-cancer agent and enriching the database of β-carboline derivatives.